export3Cseq2bedGraph

export3Cseq2bedGraph,r3Cseq-method


		r3Cseq object, The object might contain the interaction regions generated by function <a rd-options="" href="/link/getInteractions?package=r3Cseq&version=1.18.0" data-mini-rdoc="r3Cseq::getInteractions">getInteractions</a>
	

object


			read_count : read count per restriction fragment
			rpm : normalized read per million per restriction fragment
	

datatype


  export interaction regions from RagedData to the bedGraph format, which
  suitable for uploading to the UCSC genome browser


This package is an implementation of data analysis for the
long-range interactions from 3C-seq assay.

Supat Thongjuea

r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation
Sequencing (3C-seq)

export3Cseq2bedGraph function

r3Cseq object, The object might contain the interaction regions generated by function <a href="getInteractions" rd-options="">getInteractions</a>

read_count : read count per restriction fragment
			rpm : normalized read per million per restriction fragment

export interaction regions from RagedData to the bedGraph format, which
  suitable for uploading to the UCSC genome browser

export3Cseq2bedGraph: export interaction regions to the 'bedGraph' format

Description

Usage

Arguments

Value

See Also

Examples