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r3Cseq (version 1.18.0)

getExpInteractionsInRefseq: identified significant interaction regions for RefSeq genes

Description

Get a list of genes that contain strong interaction signals in the experiment

Usage

getExpInteractionsInRefseq(obj,cutoff.qvalue=0.05,expanded_upstream=50e3,expanded_downstream=10e3)

Arguments

obj
obj is r3Cseq or r3CseqInBatch object
cutoff.qvalue
Numeric. The cutoff q-value (default=0.05)
expanded_upstream
Numeric. The expanded distance from the upstream of a gene start (default=50e3)
expanded_downstream
Numeric. The expanded distance from the downstream of a gene end (default =10e3)

Value

List of identified genes, which contain strong interaction signals

See Also

getContrInteractionsInRefseq

Examples

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