Estimate bias adjustment for recruitment deviates
A function to create a list object for the output from Stock Synthesis
A function for converting Stock Synthesis output to the format
used by FishGraph
function to plot many quantities related to output from Stock Synthesis
a function for drawing selecitivity curves
Change parameters in the control file.
R tools for Stock Synthesis
Updates r4ss files to newest versions on web.
Plot distributions of priors, posteriors, and estimates.
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
Run a likelihood profile in Stock Synthesis.
a function for drawing selecitivity curves
Get parameter lines from Stock Synthesis control file
Insert a vector of recruitment deviations into the control
file.
Split apart bootstrap data to make input file.
Plot numbers-at-age related data and fits.
A function to visual parameterization of movement in Stock Synthesis
Plot SPR quantities.
Plot indices of abundance and associated quantities.
Make plots from Rebuilder program
Plot spawner-recruit curve.
Summarize the output from multiple Stock Synthesis models.
Plot biology related quantities.
A function for converting Stock Synthesis output to the format
used by FishGraph
Create multi-figure plots.
Make files and set up folders for simulations
Plot yield and surplus production.
Run a collection of simulations for Stock Synthesis.
Make a vector of colors.
Plot recruitment deviations
Plot mean weight data and fits.
plot many quantities related to output from Stock Synthesis
A function to create a list object for the output from Stock Synthesis
Plot fit to discard fraction.
Plot selectivity
Plot composition data and fits.
function "stackpoly" by Jim Lemon from "plotrix" package
Make shaded polygons with a mountain-like appearance
Create a bubble plot.
Plot distributions of priors, posteriors, and estimates.
Get output from multiple Stock Synthesis models.
Plot catch related quantities.
Plot timeseries data
Plot points with confidence intervals.
Plot tagging data and fits