Learn R Programming
⚠️There's a newer version (1.44.0) of this package.Take me there.

r4ss (version 1.01)

R code for Stock Synthesis

Description

Functions for reading output, plotting, exploring and manipulating input files for Richard Methot's Stock Synthesis fisheries stock assessment modeling platform.

Copy Link

Version

Install

install.packages('r4ss')

Monthly Downloads

611

Version

1.01

License

MIT License

Maintainer

Ian Taylor

Last Published

November 16th, 2009

Functions in r4ss (1.01)

SSv3_plots

function to plot many quantities related to output from Stock Synthesis
SS_splitdat

Split apart bootstrap data to make input file.
r4ss-package

R tools for Stock Synthesis
sel.line

a function for drawing selecitivity curves
SS_changepars

Change parameters in the control file.
SS_parlines

~~function to do ... ~~
SS_profile

Run a likelihood profile in Stock Synthesis.
SSv3_FishGraph

A function for converting Stock Synthesis output to the format used by FishGraph
selfit

A function to visual parameterization of double normal and double logistic selectivity in Stock Synthesis
SSv3_plotpars

Plot distributions of priors, posteriors, and estimates.
SS_fitbiasramp

Estimate bias adjustment for recruitment deviates
movepars

A function to visual parameterization of movement in Stock Synthesis
SSv3_output

A function to create a list object for the output from Stock Synthesis
SS_recdevs

Insert a vector of recruitment deviations into the control file.
update_r4ss_files

Updates r4ss files to newest versions on web.