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r4ss (version 1.03)

R code for Stock Synthesis

Description

Functions for reading output, plotting, exploring and manipulating input files for Richard Methot's Stock Synthesis fisheries stock assessment modeling platform.

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Version

Install

install.packages('r4ss')

Monthly Downloads

611

Version

1.03

License

MIT License

Maintainer

Ian Taylor

Last Published

January 13th, 2010

Functions in r4ss (1.03)

SSv3_output

A function to create a list object for the output from Stock Synthesis
selfit

A function to visual parameterization of double normal and double logistic selectivity in Stock Synthesis
movepars

A function to visual parameterization of movement in Stock Synthesis
SSv3_plots

function to plot many quantities related to output from Stock Synthesis
update_r4ss_files

Updates r4ss files to newest versions on web.
SSv3_plotpars

Plot distributions of priors, posteriors, and estimates.
SSv3_FishGraph

A function for converting Stock Synthesis output to the format used by FishGraph
SS_recdevs

Insert a vector of recruitment deviations into the control file.
SS_profile

Run a likelihood profile in Stock Synthesis.
SS_changepars

Change parameters in the control file.
SS_fitbiasramp

Estimate bias adjustment for recruitment deviates
SS_splitdat

Split apart bootstrap data to make input file.
r4ss-package

R tools for Stock Synthesis
sel.line

a function for drawing selecitivity curves
SS_parlines

~~function to do ... ~~