Change parameters in the control file.
A function to create a list object for the output from Stock Synthesis
Estimate bias adjustment for recruitment deviates
A function to create a list object for the output from Stock Synthesis
Plot biology related quantities.
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
Plot points with confidence intervals.
Plot composition data and fits.
Updates r4ss files to newest versions on web.
Plot SPR quantities.
A function to visual parameterization of movement in Stock Synthesis
Plot catch related quantities.
Plot selectivity
Plot yield and surplus production.
A function for converting Stock Synthesis output to the format
used by FishGraph
plot many quantities related to output from Stock Synthesis
Split apart bootstrap data to make input file.
function to plot many quantities related to output from Stock Synthesis
Insert a vector of recruitment deviations into the control
file.
Plot spawner-recruit curve.
Create multi-figure plots.
Run a collection of simulations for Stock Synthesis.
Plot tagging data and fits
Plot distributions of priors, posteriors, and estimates.
R tools for Stock Synthesis
Summarize the output from multiple Stock Synthesis models.
Plot timeseries data
Make plots from Rebuilder program
Plot numbers-at-age related data and fits.
Run a likelihood profile in Stock Synthesis.
Get output from multiple Stock Synthesis models.
Plot recruitment deviations
Get parameter lines from Stock Synthesis control file
Plot indices of abundance and associated quantities.
Plot fit to discard fraction.
Make a vector of colors.
Create a bubble plot.
Make shaded polygons with a mountain-like appearance
Make files and set up folders for simulations
a function for drawing selecitivity curves
Plot mean weight data and fits.
function "stackpoly" by Jim Lemon from "plotrix" package