Plot fit to discard fraction.
Run a collection of simulations for Stock Synthesis.
Make a vector of colors.
a function for drawing selecitivity curves
Make plots from Rebuilder program
Summarize the output from multiple Stock Synthesis models.
Make shaded polygons with a mountain-like appearance
Plot numbers-at-age related data and fits.
Run a likelihood profile in Stock Synthesis.
A function for converting Stock Synthesis output to the format
used by FishGraph
Plot mean weight data and fits.
Insert a vector of recruitment deviations into the control
file.
Plot timeseries data
Get output from multiple Stock Synthesis models.
Plot biology related quantities.
Plot tagging data and fits
Updates r4ss files to newest versions on web.
A function to create a list object for the output from Stock Synthesis
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
Change parameters in the control file.
Make files and set up folders for simulations
Get parameter lines from Stock Synthesis control file
Plot SPR quantities.
function to plot many quantities related to output from Stock Synthesis
Plot yield and surplus production.
Plot distributions of priors, posteriors, and estimates.
Plot catch related quantities.
A function to create a list object for the output from Stock Synthesis
Plot indices of abundance and associated quantities.
Create a bubble plot.
function "stackpoly" by Jim Lemon from "plotrix" package
plot many quantities related to output from Stock Synthesis
Plot spawner-recruit curve.
Estimate bias adjustment for recruitment deviates
R tools for Stock Synthesis
Create multi-figure plots.
Plot points with confidence intervals.
Plot composition data and fits.
A function to visual parameterization of movement in Stock Synthesis
Plot recruitment deviations
Split apart bootstrap data to make input file.
Plot selectivity