plot many quantities related to output from Stock Synthesis
Plot timeseries data
Summarize the output from multiple Stock Synthesis models.
Make a vector of colors.
Plot biology related quantities.
R tools for Stock Synthesis
Create a bubble plot.
Split apart bootstrap data to make input file.
function "stackpoly" by Jim Lemon from "plotrix" package
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
Plot tagging data and fits
Make files and set up folders for simulations
Updates r4ss files to newest versions on web.
Make plots from Rebuilder program
Change parameters in the control file.
A function to create a list object for the output from Stock Synthesis
A function to visual parameterization of movement in Stock Synthesis
Plot selectivity
Plot catch related quantities.
Plot distributions of priors, posteriors, and estimates.
Plot yield and surplus production.
function to plot many quantities related to output from Stock Synthesis
A function to create a list object for the output from Stock Synthesis
Insert a vector of recruitment deviations into the control
file.
Plot fit to discard fraction.
Plot numbers-at-age related data and fits.
Plot recruitment deviations
Create multi-figure plots.
Plot points with confidence intervals.
Plot mean weight data and fits.
Run a likelihood profile in Stock Synthesis.
Run a collection of simulations for Stock Synthesis.
Get output from multiple Stock Synthesis models.
a function for drawing selecitivity curves
Plot indices of abundance and associated quantities.
Plot spawner-recruit curve.
Get parameter lines from Stock Synthesis control file
Plot composition data and fits.
Estimate bias adjustment for recruitment deviates
Make shaded polygons with a mountain-like appearance
A function for converting Stock Synthesis output to the format
used by FishGraph
Plot SPR quantities.