Insert a vector of recruitment deviations into the control
file.
Make a vector of colors.
Plot composition data and fits.
Create a bubble plot.
Make plots from Rebuilder program
Plot tagging data and fits
Estimate bias adjustment for recruitment deviates
Plot timeseries data
function to plot many quantities related to output from Stock Synthesis
Plot indices of abundance and associated quantities.
Plot distributions of priors, posteriors, and estimates.
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
A function to create a list object for the output from Stock Synthesis
Show movement rates on a map.
Make files and set up folders for simulations
R tools for Stock Synthesis
Get parameter lines from Stock Synthesis control file
A function for converting Stock Synthesis output to the format
used by FishGraph
Plot spawner-recruit curve.
Plot recruitment deviations
a function for drawing selecitivity curves
Plot numbers-at-age related data and fits.
Split apart bootstrap data to make input file.
Updates r4ss files to newest versions on web.
A function to create a list object for the output from Stock Synthesis
Get output from multiple Stock Synthesis models.
Change parameters in the control file.
Plot fit to discard fraction.
Make a map of movement for a 5-area Indian Ocean model
Run a collection of simulations for Stock Synthesis.
Plot SPR quantities.
Plot selectivity
Create multi-figure plots.
Plot biology related quantities.
Plot yield and surplus production.
Make shaded polygons with a mountain-like appearance
A function to visual parameterization of movement in Stock Synthesis
function "stackpoly" by Jim Lemon from "plotrix" package
Show movement rates on a map.
Run a likelihood profile in Stock Synthesis.
Plot catch related quantities.
Plot points with confidence intervals.
Plot of recruitment distribution among areas and seasons
plot many quantities related to output from Stock Synthesis
Summarize the output from multiple Stock Synthesis models.
Plot mean weight data and fits.