Estimate bias adjustment for recruitment deviates
read starter file
plot many quantities related to output from Stock Synthesis
Change parameters in the control file.
Get parameter lines from Stock Synthesis control file
Show movement rates on a map.
read control file
plot model comparisons
Plot indices of abundance and associated quantities.
Show movement rates on a map.
Plot tagging data and fits
explore movement parameterizations
Plot recruitment deviations
Updates r4ss files to newest versions on web.
Get output from multiple Stock Synthesis models.
Plot composition data and fits.
read forecast file
Insert a vector of recruitment deviations into the control
file.
write forecast file
A function to create a list object for the output from Stock Synthesis
old plot funciton
Summarize the output from multiple Stock Synthesis models.
Split apart bootstrap data to make input file.
Plot mean weight data and fits.
Plot SPR quantities.
Plot numbers-at-age related data and fits.
make a list for SS data
write starter file
Plot spawner-recruit curve.
Plot catch related quantities.
function "stackpoly" by Jim Lemon from "plotrix" package
Plot selectivity
Create multi-figure plots.
write data file
Plot of recruitment distribution among areas and seasons
Create a bubble plot.
Make shaded polygons with a mountain-like appearance
Old output reader
Make a map of movement for a 5-area Indian Ocean model
Run a likelihood profile in Stock Synthesis.
Make plots from Rebuilder program
Make files and set up folders for simulations
Run a collection of simulations for Stock Synthesis.
Plot distributions of priors, posteriors, and estimates.
Plot timeseries data
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
read data file
R tools for Stock Synthesis
A function for converting Stock Synthesis output to the format
used by FishGraph
write control file
Plot biology related quantities.
Plot fit to discard fraction.
Plot yield and surplus production.
Make a vector of colors.
Plot points with confidence intervals.
a function for drawing selecitivity curves