r4ss (version 1.16)

SSsummarize: Summarize the output from multiple Stock Synthesis models.

Description

Summarize various quantities from the model output collected by SSgetoutput and return them in a list of tables and vectors.

Usage

SSsummarize(biglist, keyvec = NULL, numvec = NULL,
selfactor = "Lsel", selfleet = NULL, selyr = "min", selgender = 1,
lowerCI = 0.025, upperCI = 0.975)

Arguments

biglist

A list of lists created by SSgetoutput.

keyvec

Optional list of strings matching names of elements of biglist to subset. Default=NULL.

numvec

Optional list of numbers of elements from biglist to subset. Default=NULL.

selfactor

A string or vector of strings indicating which elements of the selectivity at length output to summarize. Default=c("Lsel").

selfleet

Vector of fleets for which selectivity will be summarized. NULL=all fleets. Default=NULL.

selyr

String or vector of years for which selectivity will be summarized. NOTE: NOT CURRENTLY WORKING. Options: NULL=all years, "min" = first year, "max" = last year. Default="min".

selgender

Vector of genders (1 and/or 2) for which selectivity will be summarized. NULL=all genders. Default=NULL.

lowerCI

Quantile for lower bound on calculated intervals. Default = 0.025 for 95% intervals.

upperCI

Quantile for upper bound on calculated intervals. Default = 0.975 for 95% intervals.

Value

See Also

SSgetoutput SSrunsims