Usage
mcmc.nuisance(directory = "c:/mydirectory/", run = "mymodel/",
file = "posteriors.sso", file2 = "derived_posteriors.sso",
bothfiles = FALSE, printstats = FALSE, burn = 0, header = F, thin = 1,
trace = 0, labelstrings = "all", columnnumbers = "all", sep = "")
Arguments
directory
Directory where all results are located, one level above directory
for particular run.
run
Directory with files from a particular run.
file
File containing posterior samples for nuisance parameters. This
could be posteriors.sso or something written by the function
SSgetMCMC. file2
Optional second file containing posterior samples for nuisance
parameters. This could be derived_posteriors.sso.
bothfiles
TRUE/FALSE indicator on whether to read file2 in addition to
file1.
printstats
Return all the statistics for a closer look.
burn
Optional burn-in value to apply on top of the option in the
starter file and SSgetMCMC. header
Data file with header?
thin
Optional thinning value to apply on top of the option in the
starter file, in the mcsave runtime command, and in
SSgetMCMC. trace
Plot trace for param # (to help sort out problem parameters).
labelstrings
Vector of strings that partially match the labels of the parameters
you want to consider.
columnnumbers
Vector of column numbers indicating the columns you want to consider.
sep
Separator for data file passed to the read.table function.