Usage
SSplotTags(replist = replist, subplots = 1:8, latency = 0, rows = 1,
cols = 1, tagrows = 3, tagcols = 3, plot = TRUE, print = FALSE,
pntscalar = 2.6, minnbubble = 8, pwidth = 7, pheight = 7, punits = "in",
ptsize = 12, res = 300, cex.main = 1, col1 = "blue", col2 = "red",
col3 = "grey95", col4 = "grey70",
labels = c("Year", "Frequency", "Tag Group",
"Fit to tag recaptures by tag group",
"Tag recaptures aggregated across tag groups",
"Observed tag recaptures by year and tag group",
"Residuals for tag recaptures: (obs-exp)/sqrt(exp)",
"Observed and expected tag recaptures by year and tag group"),
plotdir = "default", verbose = TRUE)Arguments
replist
list created by SS_output
subplots
vector controlling which subplots to create
latency
period of tag mixing to exclude from plots (in future could be
included in SS output)
rows
number or rows of panels for regular plots
cols
number or columns of panels for regular plots
tagrows
number or rows of panels for multi-panel plots
tagcols
number or columns of panels for multi-panel plots
plot
plot to active plot device?
pntscalar
maximum bubble size for
balloon plots; each plot scaled independently based on this maximum
size and the values plotted. Often some plots look better with one
value and others with a larger or smaller value. Default=2.6
minnbubble
minimum number of years below
which blank years will be added to bubble plots to avoid cropping
pwidth
default width of plots printed to files in units of punits. Default=7.
pheight
default height width of plots printed to files in units of punits. Default=7.
punits
units for pwidth and pheight. Can be "px" (pixels), "in" (inches), "cm" or "mm". Default="in".
ptsize
point size for plotted text in plots printed to files (see help("png") in R for details). Default=12.
res
resolution of plots printed to files. Default=300
cex.main
character expansion parameter for plot titles
col2
color for lines with expected values
col3
shading color for observations within latency period
col4
shading color for observations after latency period
labels
vector of labels for plots (titles and axis labels)
plotdir
directory where PNG files will be written. by default it will
be the directory where the model was run.
verbose
return updates of function progress to the R GUI?