Usage
SS_profile(dir = "C:/myfiles/mymodels/myrun/", masterctlfile =
"control.ss_new", newctlfile = "control_modified.ss",
linenum = NULL, string = NULL, profilevec = NULL,
usepar = TRUE, dircopy = TRUE, exe.delete = FALSE,
command = "SS3 -nox", model = "ss3", systemcmd =
FALSE, saveoutput = TRUE, overwrite = FALSE, verbose =
TRUE)
Arguments
dir
Directory where input files and executable are located.
masterctlfile
Source control file. Default = "control.ss_new"
newctlfile
Destination for new control files (must match entry
in starter file). Default = "control_modified.ss".
linenum
Line number of parameter to be changed.
Can be used instead of string or left as NULL.
string
String partially matching name of parameter to be
changed. Can be used instead of linenum or left as NULL.
usepar
Use PAR file from previous profile step for starting
values? NOT IMPLEMENTED YET.
dircopy
Copy directories for each run? NOT IMPLEMENTED YET.
exe.delete
Delete exe files in each directory?
NOT IMPLEMENTED YET.
profilevec
Vector of values to profile over. Default = NULL.
command
Call to executable. Default = "SS3 -nox".
model
Name of executable. Default = "ss3".
systemcmd
Should R call SS using "system" function intead of
"shell". This may be required when running R in Emacs. Default = FALSE.
saveoutput
Copy output .SSO files to unique names.
Default = TRUE.
overwrite
Overwrite any existing .SSO files. Default = FALSE.
verbose
Controls amount of info output to command line.
Default = TRUE.