Usage
SSplotCohorts(replist,subplots=1:2,add=FALSE,
plot=TRUE,print=FALSE,
cohortcols="default",
cohortfrac=1,
cohortvec=NULL,
cohortlabfrac=0.1,
cohortlabvec=NULL,
lwd=3,
plotdir="default",
xlab="Year",
labels=c("Age",
"Cumulative catch by cohort (in numbers x1000)",
"Cumulative catch by cohort (x1000 mt)"),
pwidth=7,pheight=7,punits="in",res=300,ptsize=12,
cex.main=1,
verbose=TRUE)Arguments
replist
List created by SS_output
subplots
Vector controlling which subplots to create
add
Add to existing plot? (not yet implemented)
plot
Plot to active plot device?
cohortcols
Vector of colors to show for each cohort. Default is range of colors
shade indicating time period.
cohortfrac
What fraction of the cohorts to include in plot. If value < 1 is
used, then cohorts are filtered to only include those with the
highest maximum cumulative catch. Value will be overridden by
cohortvec.
cohortvec
Optional vector of birth years for cohorts to include in plot. Value
overrides cohortfrac.
cohortlabfrac
What fraction of the cohorts to label in plot. By default, top
10% of cohorts are labeled. Value will be overridden by
cohortlabvec.
cohortlabvec
Optional vector of birth years for cohorts to label in plot. Value
overrides cohortlabfrac.
plotdir
Directory where PNG or PDF files will be written. By default it will
be the directory where the model was run.
xlab
x-label for all plots
labels
Vector of labels for plots (titles and axis labels)
pwidth
Width of plot written to PNG file
pheight
Height of plot written to PNG file
res
Resolution for PNG file
ptsize
ptsize for PNG file
cex.main
Character expansion for plot titles (no titles in this function yet)
verbose
Report progress to R console?