Usage
SSplotRetroDevs(retroSummary, endyrvec, cohorts, ylim = c(-3, 3),
uncertainty = FALSE,
labels = c("Recruitment deviation relative to recent estimate",
"Recruitment deviation", "Age"),
main = "Retrospective analysis of recruitment deviations",
mcmcVec = FALSE, relative = FALSE,
labelyears = TRUE, legend = FALSE, leg.ncols = 4)Arguments
retroSummary
List object created by SSsummarize that summarizes the
results of a set of retrospective analysis models.ss endyrvec
Vector of years representing the final year
of values to show for each model.
cohorts
Which cohorts to show in plot.
uncertainty
Show uncertainty intervals around lines? (This can get a bit busy.)
labels
Vector of plot labels.
mcmcVec
Either vector of TRUE/FALSE values indicating which models use MCMC.
Or single value applied to all models.
relative
Show deviations relative to most recent estimate or relative to 0.
labelyears
Label cohorts with text at the end of each line?
legend
Add a legend showing which color goes with which line (as
alternative to labelyears).
leg.ncols
Number of columns for the legend.