Iteratively runs SS model with different jittered starting parameter values (jitter value must be mannually set in starter.ss). Output files are renamed in the format Report1.sso, Report2.sso, etc.
SS_RunJitter(mydir, model = "ss3",
extras = "-nohess -cbs 500000000 -gbs 500000000", Njitter, Intern = TRUE,
systemcmd = FALSE, printlikes = TRUE)Directory where model files are located
Executable name
Additional command line arguments passed to executable
Number of jitters, or a vector of jitter iterations.
If length(Njitter) > 1 only the iterations specified will be ran,
else 1:Njitter will be executed.
Show command line info in R console or keep hidden (Internal=TRUE)
Option to switch between 'shell' and 'system'
Print likelihood values to console
A vector of likelihoods for each jitter iteration.