Plot shows graphical display of what data is being used in the model. Some data types may not yet be included. Note, this is based on output from the model, not the input data file.
SSplotData(replist, plot = TRUE, print = FALSE, plotdir = "default",
fleetcol = "default", datatypes = "all", fleets = "all",
fleetnames = "default", ghost = FALSE, pwidth = 6.5, pheight = 5,
punits = "in", res = 300, ptsize = 10, cex.main = 1,
margins = c(5.1, 2.1, 2.1, 8.1), cex = 2, lwd = 12, verbose = TRUE)list created by SS_output
plot to active plot device?
print to PNG files?
directory where PNG files will be written. by default it will be the directory where the model was run.
Either the string "default", or a vector of colors to use for each fleet.
Either the string "all", or a vector including some subset of the following: "catch", "cpue", "lendbase", "sizedbase", "agedbase", "condbase", "ghostagedbase", "ghostcondbase", "ghostlendbase", "ladbase", "wadbase", "mnwgt", "discard", "tagdbase1", "tagdbase2".
Either the string "all", or a vector of numerical values, like c(1,3), listing fleets or surveys to be included in the plot.
A vector of alternative names to use in the plot. By default the parameter names in the data file are used.
TRUE/FALSE indicator for whether to show presence of composition data from ghost fleets (data for which the fit is shown, but is not included in the likelihood calculations).
width of plot
height of plot
units for PNG file
resolution for PNG file
point size for PNG file
character expansion for plot titles
margins of plot (passed to par() function), which may need to be increased if fleet names run off right-hand margin
Character expansion for points showing isolated years of data
Line width for lines showing ranges of years of data
report progress to R GUI?