Plot yield and surplus production from Stock Synthesis output. Surplus production is based on Walters et al. (2008).
SSplotYield(replist, subplots = 1:2, add = FALSE, plot = TRUE,
print = FALSE, labels = c("Relative depletion", "Equilibrium yield (mt)",
"Total biomass (mt)", "Surplus production (mt)"), col = "blue", lty = 1,
lwd = 2, cex.main = 1, pwidth = 6.5, pheight = 5, punits = "in",
res = 300, ptsize = 10, plotdir = "default", verbose = TRUE)list created by SS_output
vector controlling which subplots to create
add to existing plot? (not yet implemented)
plot to active plot device?
print to PNG files?
vector of labels for plots (titles and axis labels)
line color (only applied to equilbrium yield plot at this time)
line type (only applied to equilbrium yield plot at this time)
line width (only applied to equilbrium yield plot at this time)
character expansion for plot titles
width of plot
height of plot
units for PNG file
resolution for PNG file
point size for PNG file
directory where PNG files will be written. by default it will be the directory where the model was run.
report progress to R GUI?
Walters, Hilborn, and Christensen, 2008, Surplus production dynamics in declining and recovering fish populations. Can. J. Fish. Aquat. Sci. 65: 2536-2551