r4ss (version 1.36.1)

DoProjectPlots: Make plots from Rebuilder program

Description

Make a set of plots based on output from Andre Punt's Rebuilder program.

Usage

DoProjectPlots(dirn = "C:/myfiles/", fileN = c("res.csv"),
  Titles = "", ncols = 200, Plots = list(1:25),
  Options = list(c(1:9)), LegLoc = "bottomright", yearmax = -1,
  Outlines = c(2, 2), OutlineMulti = c(2, 2), AllTraj = c(1, 2, 3,
  4), AllInd = c(1, 2, 3, 4, 5, 6, 7), BioType = "Spawning biomass",
  CatchUnit = "(mt)", BioUnit = "(mt)", BioScalar = 1,
  ColorsUsed = "default", Labels = "default", pdf = FALSE,
  pwidth = 6.5, pheight = 5, lwd = 2)

Arguments

dirn

Directory (or vector of directories) where rebuilder output files are stored.

fileN

Vector of filenames containing rebuilder output. Default=c("res.csv").

Titles

Titles for plots when using multiple filenames. Default="".

ncols

Number of columns to read in output file (fileN). Default=200.

Plots

List to get specific plots (currently 1 through 8). Default=list(1:25). If there are multiple files, supply a list of vectors, e.g. list(c(1,5),c(2:5))

Options

List to get specific strategies in the trajectory plots. Default=list(c(1:9)).If there are multiple files, supply a list of vectors, e.g. list(c(1,5),c(2:5))

LegLoc

Location for the legend (for plots with a legend). Default="bottomright".

yearmax

Maximum year to show in the plots. Set negative to show all years. Default=-1.

Outlines

Number of rows, columns for some of the plots. Default=c(2,2).

OutlineMulti

Number of rows, columns for other plots. Default=c(2,2).

AllTraj

Vector of trajectories to show. Default=c(1,2,3,4).

AllInd

Vector of individual plots to show. Default=c(1,2,3,4,5,6,7).

BioType

Label for biomass type. Default="Spawning biomass".

CatchUnit

Units of catch. Default="(mt)".

BioUnit

Units of biomass. Default="(mt)".

BioScalar

Scalar for biomass plot. Default=1.

ColorsUsed

Optional vector for alternative line colors. Default="default".

Labels

Optional vector for alternative legend labels. Default="default".

pdf

Option to send figures to pdf file instead of plot window in Rgui. Default=FALSE.

pwidth

Width of the plot window or PDF file (in inches). Default=7.

pheight

Height of the plot window or PDF file (in inches). Default=7.

lwd

Line width for many of the plot elements. Default=2.

Examples

# NOT RUN {
# }
# NOT RUN {
# example with one file
 DoProjectPlots(dirn="c:/myfiles/", Plots=1:8,
                Options=c(1,2,3,4,5,9), LegLoc="bottomleft")

# example with multiple files
 # Plots - set to get specific plots
 # Options - set to get specific strategies in the trajectory plots

 Titles <- c("Res1","Res2","Res3")
 Plots <- list(c(1:9),c(6:7))
 Options <- list(c(7:9,3),c(5,7))
 DoProjectPlots(fileN=c("res1.csv","res2.csv"),Titles=Titles,Plots=Plots,
                Options=Options,LegLoc="bottomleft",yearmax=-1,
                Outlines=c(2,2),OutlineMulti=c(3,3),AllTraj=c(1:4),
                AllInd=c(1:7),BioType="Spawning numbers",BioUnit="(lb)",
                BioScalar=1000,CatchUnit="(lb)",
                ColorsUse=rep(c("red","blue"),5),
                Labels=c("A","B","C","D","E","F"))
# }
# NOT RUN {
# }