Reads the Report.sso within the directory and creates executive summary tables as required by the current Terms of Reference for West Coast groundfish. Works with Stock Synthesis versions 3.24U and later. Additionally, historical catch and numbers at ages tables are created.
SSexecutivesummary(dir, plotdir = "default", quant = 0.95,
es.only = FALSE, tables = c("a", "b", "c", "d", "e", "f", "g", "h",
"i", "catch", "numbers"), nsex = FALSE, endyr = NULL,
verbose = TRUE)Locates the directory of the files to be read in, double backslashes (or forwardslashes) and quotes necessary.
Directory where the 'tables' directory will be created. The default is the dir location where the Report.sso file is located.
To calculate confidence intervals, default is set at 0.95
TRUE/FALSE switch to produce only the executive summary tables will be produced, default is FALSE which will return all executive summary tables, historical catches, and numbers-at-ages
Which tables to produce (default is everything). Note: some tables depend on calculations related to previous tables, so will fail if requested on their own (e.g. Table 'f' can't be created without also creating Table 'a')
This will allow the user to calculate single sex values based on the new sex specification (-1) in SS for single sex models. Default value is FALSE. TRUE will not divide by 2.
Optional input to choose a different ending year for tables (could be useful for catch-only updates)
Return updates of function progress to the R console?
A csv files containing executive summary tables.