rADA (version 1.1.9)

excludeOutliers: Exclude Outliers from Melted Assay Dataframe

Description

This function excludes outliers from the assay dataframe based on grDevices::boxplot.stats(). This outlier removal method is based on Tukey's test where outliers are removed if outside the established interquartile range.

Usage

excludeOutliers(
  assay.df.melted,
  data.transf = FALSE,
  transf.method = c("log10", "ln")
)

Arguments

assay.df.melted

A data.frame produced by assayMelt()

data.transf

Should the data should be transformed before normality is evaluated

transf.method

If data.transf is TRUE, which method should be used. Can choose between 'log10' and 'ln'.

Value

A melted data.frame

Examples

# NOT RUN {
assay.df.melted <- assayMelt(assay.df = lognormAssay, exp.name = 'Experiment1')
excludeOutliers(assay.df.melted, data.transf = TRUE, transf.method = 'log10')

# }