rADA (version 1.1.9)

scp: Calculate screening cut point

Description

This function will calculate the screening cut point from the melted assay.df

Usage

scp(
  assay.obj,
  category = NULL,
  distrib = c("normal", "nonparametric"),
  data.transf = FALSE,
  transf.method = c("log10", "ln"),
  rm.out = FALSE
)

Arguments

assay.obj

An ImmunoAssay object imported by importAssay

category

If assay.obj consists of more than 1 dataset, choose the category here to split dataset

distrib

Distribution selection to determine the cut point calculation. Two options: 'nonparametric' or 'normal'

data.transf

Should the data should be transformed before the cut point is calculated

transf.method

If data.transf is TRUE, which method should be used. Can choose between 'log10' and 'ln'.

rm.out

Should outliers be excluded from this analysis?

Value

An object of the class ImmunoAssay

Examples

# NOT RUN {
assay.obj <- importAssay(assay.df = lognormAssay, exp.name = 'Experiment1')
assay.obj <- scp(assay.obj, category = 'Experiment1', distrib = 'normal',
data.transf = TRUE, transf.method = 'log10', rm.out = FALSE)

# }