rBiopaxParser (version 2.10.0)

diffGraphs: This function returns the different nodes and edges between graph1 and graph2.

Description

This function returns the different nodes and edges between graph1 and graph2. Layout options of graph1 are kept. Coloring currently not implemented.

Usage

diffGraphs(graph1, graph2, colorNodes = TRUE, colors = c("#B3E2CD", "#FDCDAC"))

Arguments

graph1

graphNEL

graph2

graphNEL

colorNodes

logical

colors

character vector of colors. If colorNodes==TRUE these colors are used for graph1 and graph2 respectivley.

Value

Return the diff between the graphs.

Examples

# load data
 data(biopaxexample)
 pwid1 = "pid_p_100002_wntpathway"
 pwid2 = "pid_p_100146_hespathway"
 mygraph1 = pathway2RegulatoryGraph(biopax, pwid1)
 mygraph2 = pathway2RegulatoryGraph(biopax, pwid2)
 plotRegulatoryGraph(diffGraphs(mygraph1,mygraph2))