rCGH (version 1.0.0)

geneDB: Gene Annotations, in Hg19

Description

GRanges object with 23056 ranges and 1 metadata column, according to UCSC Hg19.

Usage

geneDB

Value

Format

A GRanges object including:

• seqnames, class 'Rle': chromosome number.
• ranges:, class 'IRanges': gene [start, end] position.
• strand, class 'Rle': strand.
• elementMetadata, gene_id, class 'DataFrame': entrezIds.

See Also

TxDb.Hsapiens.UCSC.hg19.knownGene genes

Examples

geneDB

# Below, how rCGH builds geneDB:
## Not run: 
# library(TxDb.Hsapiens.UCSC.hg19.knownGene)
# library( org.Hs.eg.db)
# 
# txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
# geneDB  <- genes(txdb, columns=c("gene_id"))
# geneDB
# ## End(Not run)