dup.plot

The function plots detected deviants/CNVs from functions <code>sig.snps</code>,
<code>cnv</code> and <code>dupGet</code> on a median ratio (MedRatio) Vs. proportion of
heterozygote (PropHet) plot.

Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).

Piyal Karunarathne

rCNV

Detect Copy Number Variants from SNPs Data

Qiujie Zhou

Klaus Schliep

Pascal Milesi

dup.plot function

<dl><dt>ds</dt>
<dd>a data frame of detected deviants/cnvs (outputs of functions above)</dd>
<dt>...</dt>
<dd>other graphical parameters to be passed to the function
<code>plot</code></dd></dl>

Arguments

Author

Plot classified SNPs into deviants/CNVs and non-deviants/non-CNVs — dup.plot

<dl>

<dt>ds</dt>
<dd>a data frame of detected deviants/cnvs (outputs of functions above)</dd>


<dt>...</dt>
<dd>other graphical parameters to be passed to the function
<code>plot</code></dd>

</dl>

dup.plot: Plot classified SNPs into deviants/CNVs and non-deviants/non-CNVs

Description

Usage

Value

Arguments

Author

Examples