exportVCF

A function to export tables/matrices in VCF format to VCF files

Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).

Piyal Karunarathne

rCNV

Detect Copy Number Variants from SNPs Data

Qiujie Zhou

Klaus Schliep

Pascal Milesi

exportVCF function

<dl><dt>out.vcf</dt>
<dd>a matrix or data frame in vcf file format to be exported</dd>
<dt>out.path</dt>
<dd>a character string of output path for the vcf file;
should end in the name as the vcf file and .vcf. See examples</dd>
<dt>compress</dt>
<dd>logical. whether to compress the output file. If <code>TRUE</code>,
the file will be <code>.gz</code> compressed</dd></dl>

Arguments

Author

Export VCF files — exportVCF

<dl>

<dt>out.vcf</dt>
<dd>a matrix or data frame in vcf file format to be exported</dd>


<dt>out.path</dt>
<dd>a character string of output path for the vcf file;
should end in the name as the vcf file and .vcf. See examples</dd>


<dt>compress</dt>
<dd>logical. whether to compress the output file. If <code>TRUE</code>,
the file will be <code>.gz</code> compressed</dd>

</dl>

exportVCF: Export VCF files

Description

Usage

Value

Arguments

Author

Examples