readVCF

Function to import raw single and multi-sample VCF files.
The function required the R-package <code>data.table</code> for faster importing.

Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).

Piyal Karunarathne

rCNV

Detect Copy Number Variants from SNPs Data

Qiujie Zhou

Klaus Schliep

Pascal Milesi

readVCF function

<dl><dt>vcf.file.path</dt>
<dd>path to the vcf file</dd>
<dt>verbose</dt>
<dd>logical. show progress</dd></dl>

Arguments

Author

Import VCF file — readVCF

<dl>

<dt>vcf.file.path</dt>
<dd>path to the vcf file</dd>


<dt>verbose</dt>
<dd>logical. show progress</dd>

</dl>

readVCF: Import VCF file

Description

Usage

Value

Arguments

Author

Examples