sim.als

This function simulates allele frequencies of a desired population size
under HWE

Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).

Piyal Karunarathne

rCNV

Detect Copy Number Variants from SNPs Data

Qiujie Zhou

Klaus Schliep

Pascal Milesi

sim.als function

<dl><dt>n</dt>
<dd>desired populations size (set this value same as your actual
population size for an accurate simulation)</dd>
<dt>nrun</dt>
<dd>number of simulations to run on each allele frequency.
The higher this number, the closer the simulations will be to the
theoretical values (at the cost of computer power); 10000 is an optimal value.</dd>
<dt>res</dt>
<dd>desired resolution of the theoretical allele frequency</dd>
<dt>plot</dt>
<dd>logical. whether to plot the simulation</dd></dl>

Arguments

Author

Simulate Allele Frequencies — sim.als

<dl>

<dt>n</dt>
<dd>desired populations size (set this value same as your actual
population size for an accurate simulation)</dd>


<dt>nrun</dt>
<dd>number of simulations to run on each allele frequency.
The higher this number, the closer the simulations will be to the
theoretical values (at the cost of computer power); 10000 is an optimal value.</dd>


<dt>res</dt>
<dd>desired resolution of the theoretical allele frequency</dd>


<dt>plot</dt>
<dd>logical. whether to plot the simulation</dd>

</dl>

sim.als: Simulate Allele Frequencies

Description

Usage

Value

Arguments

Author

Examples