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rEDM (version 0.4.7)

Applications of Empirical Dynamic Modeling from Time Series

Description

Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) and the S-map algorithm in Sugihara (1994) . In addition, this package implements convergent cross mapping as described by Sugihara et al. (2012) .

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Install

install.packages('rEDM')

Monthly Downloads

665

Version

0.4.7

License

GPL-3 | file LICENSE

Maintainer

Hao Ye

Last Published

March 10th, 2016

Functions in rEDM (0.4.7)

thrips_block

Apple-blossom Thrips time series
BlockLNLP

C++ compiled object for multivariate forecasting.
block_lnlp

Perform generalized forecasting using simplex projection or s-map
Xmap

C++ compiled object for convergent cross mapping.
Rcpp_LNLP-class

S4 class for Rcpp compiled object, "LNLP"
e120_biodiversity

Biodiversity data at the Cedar Creek LTER
e054_succession

Succession data at the Cedar Creek LTER
block_3sp

Time series for a three-species coupled model.
Rcpp_BlockLNLP-class

S4 class for Rcpp compiled object, "BlockLNLP"
ccm

Perform convergent cross mapping using simplex projection
make_surrogate_data

Generate surrogate data for permutation/randomization tests
sardine_anchovy_sst

Time series for the California Current Anchovy-Sardine-SST system
test_nonlinearity

Randomization test for nonlinearity using S-maps and surrogate data
tentmap_del

Time series for a tent map with mu = 2.
LNLP

C++ compiled object for univariate forecasting.
paramecium_didinium

Time series for the Paramecium-Didinium laboratory experiment
rEDM-package

Applications of empirical dynamic modeling from time series.
sockeye_returns

Time series for sockeye salmon returns.
simplex

Perform univariate forecasting
two_species_model

Time series for a two-species coupled model.
ccm_means

Take output from ccm and compute means as a function of library size.
Rcpp_Xmap-class

S4 class for Rcpp compiled object, "Xmap"