paramecium_didinium

Time series of Paramecium and Didinium abundances (#/mL) from 
 an experiment by Veilleux (1979)

datasets

A new implementation of EDM algorithms based on research software previously developed for internal use in the Sugihara Lab (UCSD/SIO). Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <DOI:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <DOI:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described in Sugihara et al. (2012) <DOI:10.1126/science.1227079> and multiview embedding as described in Ye & Sugihara (2016) <DOI:10.1126/science.aag0863>.

Sugihara Maintainer

rEDM

Applications of Empirical Dynamic Modeling from Time Series

Hao Ye

Adam Clark

Ethan Deyle

Steve Munch

Jun Cai

Jane Cowles

Yair Daon

Andrew Edwards

Os Keyes

James Stagge

Masayuki Ushio

Ethan White

Takeshi Abe

George Sugihara

paramecium_didinium function

<dl class="dl-horizontal">
 <dt><code>time</code></dt><dd>time of sampling (in days)</dd>
 <dt><code>paramecium</code></dt><dd>paramecium abundance (per mL)</dd>
 <dt><code>didinium</code></dt><dd>didinium abundance (per mL)</dd>
</dl>

Format

Time series for the Paramecium-Didinium laboratory experiment — paramecium_didinium

<dl class='dl-horizontal'>
 <dt><code>time</code></dt><dd>time of sampling (in days)</dd>
 <dt><code>paramecium</code></dt><dd>paramecium abundance (per mL)</dd>
 <dt><code>didinium</code></dt><dd>didinium abundance (per mL)</dd>
</dl>

Time series for the Paramecium-Didinium laboratory experiment

paramecium_didinium: Time series for the Paramecium-Didinium laboratory experiment

Description

Usage

Arguments

Format