thrips_block

Seasonal outbreaks of Thrips imaginis.

datasets

A new implementation of EDM algorithms based on research software previously developed for internal use in the Sugihara Lab (UCSD/SIO). Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <DOI:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <DOI:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described in Sugihara et al. (2012) <DOI:10.1126/science.1227079> and multiview embedding as described in Ye & Sugihara (2016) <DOI:10.1126/science.aag0863>.

Sugihara Maintainer

rEDM

Applications of Empirical Dynamic Modeling from Time Series

Hao Ye

Adam Clark

Ethan Deyle

Steve Munch

Jun Cai

Jane Cowles

Yair Daon

Andrew Edwards

Os Keyes

James Stagge

Masayuki Ushio

Ethan White

Takeshi Abe

George Sugihara

thrips_block function

A data frame with 81 rows and 6 variables:<dl class="dl-horizontal">
 <dt><code>Year</code></dt><dd>year</dd>
 <dt><code>Month</code></dt><dd>month</dd>
 <dt><code>Thrips_imaginis</code></dt><dd>counts of Thrips imaginis</dd>
 <dt><code>maxT_degC</code></dt><dd>mean maximum dail temperature in each month 
 (Celsius)</dd>
 <dt><code>Rain_mm</code></dt><dd>monthly rainfall (mm)</dd>
 <dt><code>Season</code></dt><dd>annual sinusoidal that peaks in December</dd>
</dl>

Format

Apple-blossom Thrips time series — thrips_block

A data frame with 81 rows and 6 variables:<dl class='dl-horizontal'>
 <dt><code>Year</code></dt><dd>year</dd>
 <dt><code>Month</code></dt><dd>month</dd>
 <dt><code>Thrips_imaginis</code></dt><dd>counts of Thrips imaginis</dd>
 <dt><code>maxT_degC</code></dt><dd>mean maximum dail temperature in each month 
 (Celsius)</dd>
 <dt><code>Rain_mm</code></dt><dd>monthly rainfall (mm)</dd>
 <dt><code>Season</code></dt><dd>annual sinusoidal that peaks in December</dd>
</dl>

Apple-blossom Thrips time series

thrips_block: Apple-blossom Thrips time series

Description

Usage

Arguments

Format