TRAC: Creating an EMM from a Regular Clustering
Create an EMM from a regular clustering (k-means or PAM) of sequence data.
TRAC(x, data = NULL, measure = "euclidean")
- a clustering object (result of kmeans or pam) or a vector with (integer) cluster assignments.
- the data used for clustering (only used if
xis a cluster assignment vector).
- used distance measure.
The order is inferred from the order in the original data set.
EMMobject representing the clustering of sequence data.
data("EMMsim") ## using kmeans cl <- kmeans(EMMsim_train, 10) emm <- TRAC(cl) emm plot(emm, method = "MDS") ## using a cluster assignment vector (taken from the k-means clustering above) x <- cl$cluster emm <- TRAC(x, data = EMMsim_train) emm plot(emm, method = "MDS")