rNeighborQTL (version 1.1.1)

plot_nei: Plot LOD score for self or neighbor QTL effects

Description

Plot LOD curves for a genome scan of self and neighbor QTL effects.

Usage

plot_nei(res, type = c("neighbor", "self", "int"), chr = NULL, th = NULL, ...)

Arguments

res

Output results of scan_neighbor().

type

Plot "self", "neighbor" or "int" effects. Default is "neighbor" effects.

chr

An optional vector to select chromosome numbers to be plotted. If NULL, shown are all chromosomes.

th

Add genome-wide threshold by user-defined vectors or Bonferroni correction. Default is no thresholds added.

...

Arguments to be passed to plot().

Details

For the type argument, "int" can be selected to draw the results of int_neighbor(). In this case, the res object and type must match, otherwise it returns an error message.

See Also

scan_neighbor int_neighbor perm_neighbor