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rPlant (version 1.2)

R interface to the iPlant Discovery Environment

Description

An R interface to the iPlant DE (and, in the future, other phyloinformatics web apps, like the CIPRES Science Gateway)

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Version

Install

install.packages('rPlant')

Monthly Downloads

31

Version

1.2

License

GPL (>= 2)

Maintainer

Barb Banbury

Last Published

October 2nd, 2012

Functions in rPlant (1.2)

GetCitations

DE citations
RunMuscle

MUSCLE alignment
RunQuicktree

Quicktree
ListDir

Directory management
TNRS

Resolving Names via TNRS
ListApps

Deployed applications
SubmitJob

Executing analytical applications
rplant-package

rplant
RunRAxMLprotein

RAxML
RunMafft

MAFFT Multiple Sequence Alignment
RunClustal

ClustalW alignment
GetToken

Authentication functions
RunParsdna

Run Phylip Parsimony
Land plants

Land plant rbcL sequences
RunParsprotein

Run Phylip Parsimony
RunRAxMLdna

RAxML
UploadFile

File management