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rPlant (version 2.7)

R interface to the iPlant Discovery Environment

Description

rPlant is an R interface to the the many computational resources iPlant offers through their RESTful application programming interface. Currently, rPlant functions interact with the iPlant foundational API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using rPlant, users will have to register with the iPlant Collaborative. http://www.iplantcollaborative.org/discover/discovery-environment

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Version

Install

install.packages('rPlant')

Monthly Downloads

31

Version

2.7

License

GPL (>= 2)

Maintainer

Barb Banbury

Last Published

May 21st, 2013

Functions in rPlant (2.7)

ListApps

Deployed applications
Land plants

Land plant rbcL sequences
GetCitations

DE citations
rplant-package

rplant
RunParsdna

Run Phylip Parsimony
RunMuscle

MUSCLE alignment
SubmitJob

Executing analytical applications
TNRS

Resolving Names via TNRS
RunRAxMLdna

RAxML
RunParsprotein

Run Phylip Parsimony
RunMafft

MAFFT Multiple Sequence Alignment
RunClustal

ClustalW alignment
UploadFile

File management
ListDir

Directory management
RunRAxMLprotein

RAxML
RunQuicktree

Quicktree
GetToken

Authentication functions