rSCA (version 2.0)

rSCA.inference: Inference for Stepwise Cluster Analysis

Description

This function is used for statistical inference or prediction based on an existing stepwise cluster analysis (SCA) model. The results are saved into a text file (file name: rsl_***.txt) under the current work directory.

Usage

rSCA.inference(xfile, x.row.names = FALSE, x.col.names = FALSE, 
        x.missing.flag = "NA", x.type = ".txt", model)

Arguments

xfile

a string to specify the full filename of the independent (x) data file, only supports files in *.txt or *.csv.

x.row.names

a logical value to specify if the independent (x) data file contains row names or not. Default value is FALSE.

x.col.names

a logical value to specify if the independent (x) data file contains column names or not. Default value is FALSE.

x.missing.flag

a string to specify the missing flag used in the independent (x) data file. Default value is "NA".

x.type

a string to specify the type of independent (x) data file. Default value is ".txt".

model

a SCA model object to be used for statistical inference or prediction.

References

Wang, Xiuquan, Guohe Huang, Qianguo Lin, Xianghui Nie, Guanhui Cheng, Yurui Fan, Zhong Li, Yao Yao, and Meiqin Suo (2013). A stepwise cluster analysis approach for downscaled climate projection - A Canadian case study. Environmental Modelling & Software, 49: 141-151. Huang, Guohe (1992). A stepwise cluster analysis method for predicting air quality in an urban environment. Atmospheric Environment (Part B. Urban Atmosphere), 26(3): 349-357. Liu, Y. Y. and Y. L. Wang (1979). Application of stepwise cluster analysis in medical research. Scientia Sinica, 22(9): 1082-1094.

Examples

## Load rSCA package
library(rSCA)

## X data file
xdata <- c("A B C Dr", "0.095 0.044 39.9 27r", 
           "0.810 0.058 9.1 8r", "0.101 0.077 11.4 14r",
           "0.006 0.141 20.5 29r", "0.070 0.281 27.3 26r",
           "0.481 0.514 30.2 48r", "0.120 0.286 36.4 39r",
           "0.480 0.199 40.9 27r", "0.112 0.101 29.9 18r",
           "0.026 0.203 48.1 28r", "0.128 1.235 48.2 61r",
           "2.681 0.439 51.1 98r", "1.601 0.333 56.1 99r",
           "1.398 0.455 19.3 103r", "1.256 0.314 14.9 17r",
           "2.618 0.609 9.1 19r", "1.217 0.880 17.2 73r",
           "1.411 2.115 19.6 203r", "0.245 6.839 49.2 296r",
           "0.724 3.060 17.1 192r", "0.019 2.252 29.1 123r",
           "1.321 5.730 41.1 288r", "0.903 3.078 39.0 97r",
           "0.714 1.013 16.7 5r", "0.581 1.398 11.7 57r",
           "0.080 1.734 10.2 52r", "0.120 1.848 6.6 132r",
           "0.089 1.357 10.3 148r", "0.112 0.585 19.3 79r",
           "0.192 0.675 6.9 39r", "0.301 1.937 11.9 6r")
xdatafile <- tempfile()
writeLines(xdata, xdatafile)

## Y data file
ydata <- c("Y1 Y2 Y3r", "0.020 0.034 10.01r",
           "0.011 0.011 6.92r", "0.016 0.018 9.53r",
           "0.022 0.018 5.04r", "0.031 0.029 8.90r",
           "0.057 0.036 9.98r", "0.040 0.048 12.96r",
           "0.061 0.050 9.84r", "0.023 0.031 8.84r",
           "0.025 0.020 4.66r", "0.041 0.042 9.02r",
           "0.070 0.029 11.37r", "0.077 0.022 11.88r",
           "0.105 0.038 11.06r", "0.038 0.027 11.64r",
           "0.058 0.019 8.25r", "0.051 0.050 10.01r",
           "0.073 0.038 9.20r", "0.123 0.080 9.91r",
           "0.089 0.046 9.37r", "0.073 0.039 7.99r",
           "0.139 0.069 13.28r", "0.095 0.048 9.80r",
           "0.034 0.040 8.50r", "0.055 0.034 9.21r",
           "0.020 0.050 8.67r", "0.070 0.036 8.03r",
           "0.058 0.039 8.01r", "0.057 0.031 6.30r",
           "0.050 0.014 7.92r", "0.039 0.040 8.08r")
ydatafile <- tempfile()
writeLines(ydata, ydatafile)

## Modeling the relationship between Y and X with SCA
myModel = rSCA.modeling(xfile = xdatafile, yfile = ydatafile,
              x.col.names = TRUE, y.col.names = TRUE)

## New X data
xnewdata <- c("A B C Dr", "0.085 0.054 35.9 29r", 
           "0.820 0.068 9.2 7r", "0.121 0.067 12.4 13r",
           "0.016 0.151 21.5 24r", "0.075 0.283 25.3 16r",
           "0.581 0.524 31.2 38r", "0.130 0.486 33.4 36r")
xnewdatafile <- tempfile()
writeLines(xnewdata, xnewdatafile)

## Predict Y with the SCA model
rSCA.inference(xfile = xnewdatafile, x.col.names = TRUE, model = myModel)