returns a plotof SEA-chart which illustrates
roportion of discoveries per pathway.
Usage
plotSEA(object, by = "TDP.estimate", threshold = 0.005, n = 20)
Arguments
object
A SEA-chart object which is the output of SEA function
by
the Variable which will we mapped.
It should be either the TDP estimate or TDP bound.The default is TDP bound.
threshold
A real number between 0 and 1. Which will be used as
a visual aid to distinguish significant pathways
n
Integer. Number of raws from SEA-chart object to be plotted.
Value
Returns a plot of SEA_chart according to the selected arguments
References
Mitra Ebrahimpoor, Pietro Spitali, Kristina Hettne, Roula Tsonaka, Jelle Goeman,
Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained
and Competitive Methods, Briefings in Bioinformatics,bbz074