rSHAPE (version 0.3.2)

summarise_experimentParameters: This function will use output from summarise_experimentFiles to locate all parameter files and then report on all those parameters for the jobs that were run. This will save an RData file which will contain one object: all_parmInfo

Description

This function will use output from summarise_experimentFiles to locate all parameter files and then report on all those parameters for the jobs that were run. This will save an RData file which will contain one object: all_parmInfo

Usage

summarise_experimentParameters(func_workEnvir = new.env(),
  func_saveFile = getOption("shape_procExp_filenames")["parameters"],
  func_experimentDir = getOption("shape_workDir"),
  func_refFile = getOption("shape_procExp_filenames")["fileList"])

Arguments

func_workEnvir

This is an environment used to load files with the load function. It's used to encapsulate the loaded information to a controlled space.

func_saveFile

This is the filepath and filename (ending in .RData please) to which the results of this step will be saved.

func_experimentDir

This is the filepath to the root directoy under which all your experimental files can be found.

func_refFile

This is the filepath to the reference file that contains information regarding all the processed files for the rSHAPE experiment.