annotateModule

list of enriched transcription factors (or motifs).

enrich

TRM to compare with (to identify bridges).

list of target transcription factors (typically those with ChIP-seq data).

parent PPI network (to check membership of nodes).

list of entrezgene ids representing expressed genes.

Uses information about expression, enrichment and parent PPI network to annotate a subgraph.

rTRM identifies transcriptional regulatory modules (TRMs)
        from protein-protein interaction networks.