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rTRM (version 1.10.2)

getConcentricList: Returns a list with nodes membership to be used in a graph with a concentric layout

Description

Specify target and enriched motifs and returns a list with circle membership. This information is used by layout.concentric to position the nodes in plots.

Usage

getConcentricList(g, t, e, max.size = 60, order.by = "label")

Arguments

g
graph to layout (extract the nodes).
t
list of target nodes (will go in the center).
e
list of enriched nodes (will go in the periphery).
max.size
maximum number of nodes per layer.
order.by
ordering attribute for list before split.