rTRM (version 1.10.2)

plotTRM: Plot an annotated TRM.

Description

This function plots the output findTRM() after it has been annotated with cluster information with annotateTRM() function. Cluster membership is plotted using a pie plot.

Usage

plotTRM(g, layout = layout.fruchterman.reingold, mar = .5, vertex.col, vertex.cex, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, label.cex, label.col, label.pos = NULL, label.offset = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE)

Arguments

g

a network object with cluster information (attribute piecolor).

layout

graph layout, either a function or the output of a layout function.

mar

plot margin.

vertex.col

node color.

vertex.cex

node size.

vertex.lwd

node border line width.

edge.col

edge color.

edge.lwd

edge line width.

edge.lty

edge line type.

label

logical; whether to plot labels.

label.cex

label expansion.

label.col

label color.

label.pos

label position.

label.offset

label offset.

adjust.label.col

whether to automatically adjust label color depending on the luminance of the node's color.

normalize.layout

whether to apply layout.norm (with limits xmin=-1, xmax=1, ymin=-1, ymax=1) to the layout.