HDGERM

<p>A <code>character</code> vector of all 37 human IGHD germline gene segment alleles
in IMGT Gene-db release 2018-12-4.</p>

data

Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and TR chains,
based on J, D, or V genes as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.

Ayelet Peres

rabhit

Inference Tool for Antibody Haplotype

Moriah Gidoni

Gur Yaari

HDGERM function

<p>Values correspond to IMGT nuceltoide sequences.</p>

HDGERM: Human IGHD germlines

Description

Usage

Arguments

Format

References