KJGERM

<p>A <code>character</code> vector of all 342 human IGKJ germline gene segment alleles
in IMGT Gene-db release 2019-11-18.</p>

data

Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and TR chains,
based on J, D, or V genes as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.

Ayelet Peres

rabhit

Inference Tool for Antibody Haplotype

Moriah Gidoni

Gur Yaari

KJGERM function

<p>Values correspond to IMGT-gaped nuceltoide sequences (with
nucleotides capitalized and gaps represented by '.').</p>

KJGERM: Human IGKJ germlines

Description

Usage

Arguments

Format