KVGERM

LVGERM

A <code>character</code> vector of all 342 human IGKV germline gene segment alleles
in IMGT Gene-db release 2019-11-18.
A <code>character</code> vector of all 342 human IGLV germline gene segment alleles
in IMGT Gene-db release 2019-11-18.

data

Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and TR chains,
based on J, D, or V genes as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.

Ayelet Peres

rabhit

Inference Tool for Antibody Haplotype

Moriah Gidoni

Gur Yaari

KVGERM function

Values correspond to IMGT-gaped nuceltoide sequences (with
nucleotides capitalized and gaps represented by '.').
Values correspond to IMGT-gaped nuceltoide sequences (with
nucleotides capitalized and gaps represented by '.').

Format

Human IGKV germlines — KVGERM

Human IGKV germlines

KVGERM: Human IGKV germlines

Description

Usage

Arguments

Format