rabhit (version 0.2.5)

plotDeletionsByVpooled: Graphical output for single chromosome D or J gene deletions according to V pooled method

Description

The plotDeletionsByVpooled function generates a graphical output for single chromosome D or J gene deletions (for heavy chain only).

Usage

plotDeletionsByVpooled(
  del.df,
  chain = c("IGH", "IGK", "IGL", "TRB", "TRA"),
  K_ranges = c(3, 7)
)

Value

A single chromosome deletion visualization.

Arguments

del.df

a data.frame created by deletionsByVpooled

chain

the IG chain: IGH,IGK,IGL. Default is IGH..

K_ranges

vector of one or two integers for log(K) certainty level thresholds

Details

A data.frame created by deletionsByVpooled.

Examples

# \donttest{
# Load example data and germlines
data(samples_db)
del_db <- deletionsByVpooled(samples_db)
plotDeletionsByVpooled(del_db)
# }