readHaplotypeDb

<code>readHaplotypeDb</code> reads a tab-delimited haplotype file created by a createFullHaplotype
into a data.frame. Based on readChangeoDb function from alakazam.

Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and TR chains,
based on J, D, or V genes as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.

Ayelet Peres

rabhit

Inference Tool for Antibody Haplotype

Moriah Gidoni

Gur Yaari

readHaplotypeDb function

<dl><dt>file</dt>
<dd>tab-delimited database file output by a Change-O tool.</dd></dl>

Arguments

Read a Change-O tab-delimited database file — readHaplotypeDb

<dl>

<dt>file</dt>
<dd>tab-delimited database file output by a Change-O tool.</dd>

</dl>

readHaplotypeDb: Read a Change-O tab-delimited database file

Description

Usage

Value

Arguments