menetRNASeqMouseLiver


Temporal gene expression profiling in mouse liver, measured by
high throughput sequencing. Profiles shows the changes in gene expression
in mice under 12 h light: 12 h dark conditions. Data were originally
published by Menet et.
al. (2012) under Creative Commons License 3.0:
<a href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</a>. The data are available
in the public domain at GEO <a href="http://www.ncbi.nlm.nih.gov/geo/">http://www.ncbi.nlm.nih.gov/geo/</a> as
Dataset entry GSE36916.


This package uses non-parametric methods to detect rhythms
in time series. It deals with outliers, missing values and is
optimized for time series comprising 10-100 measurements. As it
does not assume expect any distinct waveform it is optimal or
detecting oscillating behavior (e.g. circadian or cell cycle)
in e.g. genome- or proteome-wide biological measurements such
as: micro arrays, proteome mass spectrometry, or metabolome
measurements.

Paul F Thaben

rain

Rhythmicity Analysis Incorporating Non-parametric Methods

menetRNASeqMouseLiver function

a <code>data.frame</code> containing the normalized expression values for
each gene and time point in two repeats. First number shows the time of
measurement in 'Zeitgeber Time' (ZT) whereas ZT_0 is the time of light on.
The second number specifies the biological replicate.

Format

Temporal gene expression profiling in mouse liver, measured by
high throughput sequencing. Profiles shows the changes in gene expression
in mice under 12 h light: 12 h dark conditions. Data were originally
published by Menet et.
al. (2012) under Creative Commons License 3.0:
<url>http://creativecommons.org/licenses/by/3.0/</url>. The data are available
in the public domain at GEO <url>http://www.ncbi.nlm.nih.gov/geo/</url> as
Dataset entry GSE36916.

menetRNASeqMouseLiver: Time courses of gene expression in mouse liver

Description

Usage

Arguments

Format

References