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randPedPCA (version 1.0.1)

dspc: Add downsampling index to rppca object

Description

This index is used by plot.rppca to downsample the col (colour) values. It is stored in the rppca object's ds slot.

Usage

dspc(pc, to = 10000)

Value

An (invisible) object of class rppca with a slot ds added.

Arguments

pc

an object of class rppca

to

The down-sampling parameter. A numeric > 0 or a vector or NA. Interpreted as a proportion or integer or a index vector, see details.

Details

The parameter to is used to specify and possibly which individuals are sampled. If NA, all individuals are retained. If to is of length one and is between 0 and 1, then it is interpreted as a proportion. If it is greater than 1, it is taken to be the number of individuals to be sampled (possibly rounded by sample.int). If to is a logical or an integer vector, it is used for logical or integer indexing, respectively. The integer indices of the sample individuals are written to the ds slot. If ds exists, it is overwritten with a warning.