randomGODB (version 1.1)

mapPerGene: mapPerGene

Description

characterize number of mappings per gene

Usage

mapPerGene(GOGOA3, ontology, verbose = TRUE)

Value

returns no values, but has side effect of printing out information

Arguments

GOGOA3

return value of minimalistGODB::buildGODatabase()

ontology

character c("biological_process","molecular_function","cellular_component")

verbose

Boolean if TRUE print out some information

Examples

if (FALSE) {
# GOGOA3.RData is too large to include in the R package
# so I need to load it from a file that is not in the package.
# Since this is in a file in my own file system, I could not
# include this as a regular example in the package.
# This example is given in full detail in the package vignette.
# You can generate GOGOA3.RData using the package 'minimalistGODB'
# or you can retrieve it from https://github.com/barryzee/GO/databases
dir<-"/Users/barryzeeberg/personal/GODB_RDATA/goa_human/"
load(sprintf("%s/%s",dir,"GOGOA3_goa_human.RData"))
mapPerGene(GOGOA3,ontology="biological_process")
}